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Zhilin Ning - Genetics
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Zhilin Ning

Genetics
Max Planck Society • CAS-MPG Partner Institute for Computational Biology • Shanghai • China

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • ChIP-seq analysis
  • Gene expression array analysis
Languages
  • Chinese
  • English
Programming languages
  • C
  • C++
  • Java
  • MATLAB
  • Python
  • R
  • Shell (Bash)

Fields of interest

RNA-seq analysis
Web
toxFlow
Determines the toxicity related end-points of nanoparticles (NPs). toxFlow is…
Desktop
Genexpi
Serves for identifying regulons and validating gene regulatory networks.…
Algorithm
Shrinkage Clustering
Identifies optimal number of clusters while partitioning data. Shrinkage…
ChIP-seq analysis
Desktop
HedtkeEtAl2018
Assists users in optimized block trimming. This algorithm is a polynomial-time…
Algorithm
TRUmiCount
Removes the biases inherent in raw Unique Molecular Identifier (UMI) counts and…
Desktop
ChIPWig
Serves to ChIP-seq Wig data. Wig is a standard file format, which in this…
Gene expression array analysis
Desktop
FUSTr
Allows to detect gene families in transcriptomes under strong selection. FUSTr…
Desktop
NepomucenoEtAl2018
Consists of an algorithm that integrates biological information to search…
Desktop
LZW-Kernel
Classifies protein sequence and identifies remote protein homology via…
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