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aa reads - Genomics
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Genomics
University of California System • University of California, San Diego • San Diego • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • WES analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • Python

Fields of interest

WGS analysis
Recognizes cancer-related mutation clusters. DMCM is based on kernel density…
Identifies transposable elements (TEs) of a particular order and classifies…
Provides an online platform for collecting, managing, analyzing, visualizing…
WES analysis
Calculates the mutation distance between two strings of the length…
Encodes string sequence into a mathematical representation. Nucl2Vec aims to…
Identifies genotypic loci and covariates with effects on phenotypic variance.…
Protein interaction analysis
Supplies an implementation of Regularized LS-TreeBoost & LAD-TreeBoost…
Allows to build a high-quality RNA-seq-based Gene Co-expression Network (GCN)…
Predicts protein cavity and allows functional analyses. CavityPlus can…