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alsaleh_11 - PhD student
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alsaleh_11

PhD student
University of Otago • Dunedin • New Zealand

Skills and expertise

Fields of interest
  • BS-seq analysis
  • DNA methylation array analysis
  • Gene expression array analysis
Languages
  • English
Programming languages
  • R
  • Shell (Bash)

TOOLS MAINTAINED

ABC.RAP

Desktop

ABC.RAP / Array Based CpG Region Analysis Pipeline

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Identifies candidate genes that are “differentially methylated” between cases and controls. ABC.RAP applies Student’s t-test and delta beta analysis to identify candidate genes containing multiple…

Fields of interest

BS-seq analysis
Provides a neighbor protein structure retrieval method. ContactLib scans…
Makes base calls in low coverage regions. PBHoover is a consensus and…
Examines epigenomic and transcriptomic next generation sequencing (NGS) data.…
DNA methylation array analysis
Proceeds quality control, normalizes and performs epigenome-wide association…
Identifies differential expression and methylation, and classifies samples as…
Assists users for visualizing ancestry data. AncestryView first proceeds by…
Gene expression array analysis
Models data to maintain realistic patterns of variation and correlation. FANGS…
Predicts de novo profile generation based on sequence context. SPBuild…
Provides a quick navigation into any set of scores associated to the…