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alper yilmaz - Genome Grammar and NGS Analysis
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alper yilmaz

Genome Grammar and NGS Analysis
Yıldız Technical University • Istanbul • Turkey

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Metagenomic sequencing analysis
  • Gene expression array analysis
Languages
  • English
Programming languages
  • Perl
  • R

Fields of interest

RNA-seq analysis
Builds genome-minimized strains. MinGenome excludes metabolic and regulatory…
Allows users to perform reconstruction of phylogenetic trees and ancestral…
Enables genotyping and variant annotation of resequencing data produced by…
Metagenomic sequencing analysis
Generates "policy prescriptions" for microbiome engineering. MDPbiome builds a…
Allows users to handle sequencing data with unique molecular identifiers…
Allows pathway-based analysis and visualization. PyPathway includes four…
Gene expression array analysis
Assists users for visualizing ancestry data. AncestryView first proceeds by…
Serves as a fully automatic analysis of protein family conservation within a…
Classifies protein sequence and identifies remote protein homology via…