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aolmedov - Graduate student on Tropical plant pathology
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aolmedov

Graduate student on Tropical plant pathology
University of Hawaii System • University of Hawaii at Manoa • Honolulu • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
Languages
  • English
  • Spanish
Programming languages
  • C++
  • Perl
  • Python

Fields of interest

WGS analysis
Provides a deep neural network base caller for nanopore sequencing. Chiron…
Handles repeated sequences for phylogenic inference. GCTree allows users to…
Implements several different transition kernels for updating a phylogenetic…
De novo sequencing analysis
Allows users to test multiple gene sets on a tree-transformed gene ontology…
Facilitates phylogenomic analyses on microeukaryotes. GPSit is an automated…
Enables to build custom genome browsers. GIVe is a programming library allowing…
Metagenomic sequencing analysis
Simplifies the execution of existing short read aligners (SRA) on…
Enables users to reconstruct genome-scale metabolic models for any organism…
Assists users in optimized block trimming. This algorithm is a polynomial-time…