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aprataxin - PhD
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University of Tokyo • Tokyo • Japan

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Gene expression array analysis
  • English
  • Japanese
Programming languages
  • R

Fields of interest

WGS analysis
An indexing scheme to support sequence-based querying of terabyte-scale…
Allows users to perform de novo discovery of k-mer set memories (KSMs). KMAC is…
Rectifies errors in long-read sequences. FMLRC employs the FM-index to…
RNA-seq analysis
Allows users to see expression profiles, to examine expression specificity,…
Enables transcriptome reconstruction from RNA-seq reads. IsoTree is a de novo…
Offers a toolbox dedicated to the valuation of gene regulatory networks (GRNs).…
Gene expression array analysis
Analyzes the association of gene expression indices with interval times. GAIT…
Serves for processing Infinium DNA methylation data. SeSAMe consists of light…
Cluster-select the optimal number of clusters and removes outlier objects.…