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apzlo - Bioinformatics of pulmonary diseases
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apzlo

Bioinformatics of pulmonary diseases
University of Iowa • Iowa City • United States of America

Skills and expertise

Fields of interest
  • Genome edition
  • RNA-seq analysis
  • scRNA-seq analysis
Languages
  • English
  • Italian
  • Spanish
Programming languages
  • R

Fields of interest

Genome edition
Predicts model for single guide RNA (sgRNA) on-target knockout efficacy and…
Arranges single-nucleotide and amino acid variants genome-wide and measures…
Identifies, quantifies and visualizes genuine genome editing events form CRIPR…
RNA-seq analysis
Permits the construction of tumor-cell specific gene/protein co-expression…
Allows users to filter, convert and combine multiple data files produced by…
Enhances sequencing depth in low coverage areas with CIGAR string correction.…
scRNA-seq analysis
Rectifies errors in long-read sequences. FMLRC employs the FM-index to…
Allows unsupervised and semi-supervised learning using Single Cell RNA-Seq…
Simulates experiment-specific technical replicates. BEARscc improves the…