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Arup Ghosh - Bioinformatician • Master's degree
Open to new opportunities
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Open to new opportunities

Arup Ghosh

Bioinformatician • Master's degree

Ministry of Science and Technology • Institute of Life Sciences • Bhubaneshwar, India

Working on Immunology and Systems Biology.

Skills and expertise

Omics and technologies

  • WGS analysis
  • RNA-seq analysis
  • ChIP-seq analysis

Programming languages

  • Javascript
  • PHP
  • Python
  • R
  • Shell (Bash)

Languages

  • English

Favorites and Collections

Favorites

SAMtools
Desktop
SnpEff
Desktop
Web
CNVnator
Desktop
MACS
Desktop
HOMER
Desktop
BWA
Desktop
ChIPpeakAnno
Desktop
BEDOPS
Desktop
Picard
Desktop
BEDTools
Desktop
Cufflinks
Desktop
DESeq
Desktop
VCFtools
Desktop
BioMart
Web
Biopython
Desktop
matplotlib
Desktop
HISAT
Desktop
StringTie
Desktop
ChIPseeker
Desktop
STAR
Web
Desktop
Ballgown
Desktop
Complex heatmaps
Desktop
Ggplot2
Desktop
EuMicrobedbLite
Dataset
Epigram
Desktop
biomartr
Desktop
AnnotationDbi
Desktop
Intervene
Desktop
BBMap
Desktop
vcfr
Desktop
GATK
Desktop
SnpSift
Desktop
PHeatmaps
Desktop

Reviews and Discussions

LATEST REVIEWS

CummeRbund 2018-10-02, 20:35:19
Cummerbund part of the tuxedo pipeline is a great R package, that takes cuffdiff output and has several features for further exploration of data including visualizations.
Subread 2018-10-02, 20:32:17
Very fast and easy to use tool for extracting raw read counts from aligned files. This tool can take multiple aligned files together and combines the output in one file for further analysis.

LATEST DISCUSSIONS

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Bioinformatics projects