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Arup Ghosh - PhD Student
Open to new opportunities
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Open to new opportunities

Arup Ghosh

PhD Student
Ministry of Science and Technology • Institute of Life Sciences • Bhubaneshwar • India

Working on Immunology and Systems Biology.

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • ChIP-seq analysis
Languages
  • English
Programming languages
  • Javascript
  • PHP
  • Python
  • R
  • Shell (Bash)

Favorites and Collections

Favorites

SAMtools
Desktop
SnpEff
Desktop
Web
CNVnator
Desktop
MACS
Desktop
HOMER
Desktop
BWA
Desktop
ChIPpeakAnno
Desktop
BEDOPS
Desktop
Picard
Desktop
BEDTools
Desktop
Cufflinks
Desktop
DESeq
Desktop
VCFtools
Desktop
BioMart
Web
Biopython
Desktop
matplotlib
Desktop
HISAT
Desktop
StringTie
Desktop
ChIPseeker
Desktop
STAR
Web
Desktop
Ballgown
Desktop
Complex heatmaps
Desktop
Ggplot2
Desktop
EuMicrobedbLite
Dataset
Epigram
Desktop
biomartr
Desktop
AnnotationDbi
Desktop
Intervene
Desktop
BBMap
Desktop
vcfr
Desktop
GATK
Desktop
SnpSift
Desktop
PHeatmaps
Desktop

Reviews and Discussions

LATEST REVIEWS

ASAP 2018-09-21, 18:41:58
One stop shop for single-cell RNA-seq data analysis starting from normalization, clustreing, functional annotation and more.Recently ASAP integrated a feature to create collaborative projects .
Cufflinks 2018-09-19, 11:46:30
Cufflinks is one of the earliest tools for differential gene expression analysis tools with FPKM/RPKM normalization. This tool is also capable of carrying out isoform abundance quantification and…

LATEST DISCUSSIONS

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Bioinformatics projects

Fields of interest

WGS analysis
Enables genotyping and variant annotation of resequencing data produced by…
Allows users to handle and solve the single individual haplotyping (SIH)…
Simulates genotypes for case-parent triads, case-control, and quantitative…
RNA-seq analysis
Searches specific gene expression pattern from time-series gene expression data…
Allows real-time interaction, analysis and visualization of spatial…
Rectifies errors in long-read sequences. FMLRC employs the FM-index to…
ChIP-seq analysis
Measures genomic features such as gene expression levels over time. DPGP is a…
Simplifies downstream utilization of high-throughput sequencing (HTS) data.…
Evaluates RNA-seq alignment results. RNAseqEval is a package that can be used…