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Arup Ghosh - Bioinformatician • Master's degree
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Open to new opportunities

Arup Ghosh

Bioinformatician • Master's degree

Ministry of Science and Technology • Institute of Life Sciences • Bhubaneshwar, India

Working on Immunology and Systems Biology.

Annotation

Annotation.

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SnpEff
Desktop
Web

SnpEff

Annotates and predicts the effects of single nucleotide polymorphisms (SNPs).…

Annotates and predicts the effects of single nucleotide polymorphisms (SNPs). SnpEff features include: (1) the ability to make thousands of predictions per second; (2) the ability to add custom…

HOMER
Desktop

Hypergeometric Optimization of Motif EnRichment HOMER

Performs peak finding and downstream data analysis for next-generation…

Performs peak finding and downstream data analysis for next-generation sequencing analysis. HOMER affords several tools and methods to make use of ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and…

GEO
Dataset

Gene Expression Omnibus GEO

Provides high-throughput microarray and next-generation sequence (NGS)…

Provides high-throughput microarray and next-generation sequence (NGS) functional genomic data sets. GEO archives raw data, processed data and metadata submitted by the research community. Its data…

MGI
Dataset

Mouse Genome Informatics MGI

Provides access to integrated genetic, genomic, and biological data about the…

Provides access to integrated genetic, genomic, and biological data about the laboratory mouse. MGI aims to facilitate study of human health and disease. It includes several topic areas: genes;…

RefSeq
Dataset

Reference Sequence RefSeq

Offers annotation for over 95 000 genomes. RefSeq assigns informative names to…

Offers annotation for over 95 000 genomes. RefSeq assigns informative names to genes, provides some annotation for every gene found in each genome it analyzes, and supports comparative studies by…

BioMart
Web

BioMart

Integrates BioMart data resources with data analysis software in Bioconductor.…

Integrates BioMart data resources with data analysis software in Bioconductor. BiomaRt can annotate a wide range of gene or gene product identifiers with information such as gene symbol, chromosomal…

EuMicrobedbLite
Dataset

EuMicrobedbLite

Consists of a genome resource and sequence analysis platform for oomycete…

Consists of a genome resource and sequence analysis platform for oomycete organisms. The EuMicrobedbLite system includes different assembly versions, annotations and the nomenclature of the features.…

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biomartr
Desktop

biomartr

Provides a comprehensive easy-to-use framework for automating data retrieval…

Provides a comprehensive easy-to-use framework for automating data retrieval and functional annotation for meta-genomic approaches. The biomartr package implements straightforward functions for bulk…

AnnotationDbi
Desktop

Annotation Database Interface AnnotationDbi

Provides user interface and database connection code for annotation data…

Provides user interface and database connection code for annotation data packages using SQLite data storage. AnnotationDbi is the virtual base class for all annotation packages. It contains a…

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SnpSift
Desktop

SnpSift

Recognizes causative gene candidate using only two alleles of a male-sterile…

Recognizes causative gene candidate using only two alleles of a male-sterile Drosophila locus. SnpSift can interpret weak single nucleotide polymorphisms (SNPs) such as those located in the 5’UTR or…