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Arup Ghosh - Bioinformatician • Master's degree
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Open to new opportunities

Arup Ghosh

Bioinformatician • Master's degree

Ministry of Science and Technology • Institute of Life Sciences • Bhubaneshwar, India

Working on Immunology and Systems Biology.

Variant Calling

Genomic variation discovery tools.

CNVnator
Desktop

CNVnator

Finds copy number variations (CNVs) from a statistical analysis of mapping…

Finds copy number variations (CNVs) from a statistical analysis of mapping density of short reads from next-generation sequencing platforms. CNVnator separates the whole genome into non-overlapping…

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VCFtools
Desktop

VCFtools

Permits users to parse, analyze and manipulate VCF files. VCFtools is a…

Permits users to parse, analyze and manipulate VCF files. VCFtools is a software package for composed of two modules: the first is a general API that allows various operations to be performed on VCF…

TCGA Data Portal
Dataset

The Cancer Genome Atlas Data Portal TCGA Data Portal

Generates, analyzes, and makes available genomic sequence, expression,…

Generates, analyzes, and makes available genomic sequence, expression, methylation, and copy number variation (CNV) data on over 11,000 individuals who represent over 30 different types of cancer.…

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BBTools
Desktop

BBTools

Uses as a splice-aware aligner for short and long reads. BBTools is shown to be…

Uses as a splice-aware aligner for short and long reads. BBTools is shown to be a fast and accurate aligner, capable of correctly handling an overall wider variety of references, reads, and mutations…

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vcfr
Desktop

vcfr

Helps users to manipulate and visualize VCF data. vcfr provides ready access to…

Helps users to manipulate and visualize VCF data. vcfr provides ready access to the multitude of statistical and graphical tools provided by the R environment. It contains functions to parse VCF data…

GATK
Desktop

Genome Analysis ToolKit GATK

Focuses on variant discovery and genotyping. GATK provides a toolkit, developed…

Focuses on variant discovery and genotyping. GATK provides a toolkit, developed at the Broad Institute, composed of several tools and able to support projects of any size. The application compiles an…

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PyVCF
Desktop

PyVCF

Provides a way to read Variant Call Format files for Python.

Provides a way to read Variant Call Format files for Python.