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ashakru - Translational profiling and network analysis in aggressive B cell lymphomas
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ashakru

Translational profiling and network analysis in aggressive B cell lymphomas
University of Cambridge • Cambridge • United Kingdom

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • ChIP-seq analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • Python
  • R

Fields of interest

RNA-seq analysis
Performs prediction of master regulators. TETRAMER is a Cytoscape App that (i)…
Identifies optimal number of clusters while partitioning data. Shrinkage…
Assists users to observe the potential function of new genes according to those…
ChIP-seq analysis
Provides a library written in Nim programming language that suits for simple…
Refines regulatory motifs. LMMO consists of a large-margin-type algorithm that…
Enables network discovery from perturbed expression data. This approach…
Protein interaction analysis
Allows inference of hub graphical models from high-dimensional data. DWLasso…
Labels the donor/acceptor capacity of each atom and characterizes each H-bond…
Creates PyMOL hydrogen bonds (H-bonds) interaction views from Hbind tables.…