Unlock your biological data

?
aupadhyay's avatar image
aupadhyay - Bioinformatics Analyst working on single-cell analysis of B cells
Open to new opportunities
aupadhyay's avatar image
Upload a photo
Open to new opportunities

aupadhyay

Bioinformatics Analyst working on single-cell analysis of B cells
Emory University • Atlanta • United States of America

Skills and expertise

Fields of interest
  • Immune system analysis
  • RNA-seq analysis
  • scRNA-seq analysis
Languages
  • English
Programming languages
  • Perl
  • Python

Fields of interest

Immune system analysis
Models tumor immune evasion by integrating expression signatures of T cell…
Performs an unsupervised data structure deconvolution and mapping to external…
Provides a means to model T cell receptors (TCRs) structures from sequence.…
RNA-seq analysis
Constructs publication-quality visualizations from Cuffdiff, edgeR, and DESeq2.…
Performs detection of RNA-seq differential expression (DE). RoMA is a DE…
Serves for identifying regulons and validating gene regulatory networks.…
scRNA-seq analysis
Provides a deep neural network base caller for nanopore sequencing. Chiron…
Allows differential expression (DE) analysis of scRNA-seq data. DEsingle is…
Evaluates RNA-seq alignment results. RNAseqEval is a package that can be used…