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sharmistha chakrabortty - Bioinformatics and Computational Biology Doctoral student
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sharmistha chakrabortty

Bioinformatics and Computational Biology Doctoral student
Iowa State University • Ames • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • English
Programming languages
  • Java
  • Perl
  • Python
  • R

Fields of interest

WGS analysis
Improves the accuracy of de novo genome assemblies of highly heterozygous…
Trains a decision tree from single nucleotide polymorphism database (dbSNP) and…
Performs somatic variant calling. DeepSomatic consists of a convolutional…
RNA-seq analysis
Performs automated joint deconvolution and phylogeny inference of tumor genomic…
Serves to ChIP-seq Wig data. Wig is a standard file format, which in this…
A robust rank-based classifier for gene expression classification. AUCTSP works…
Gene expression array analysis
Analyzes the association of gene expression indices with interval times. GAIT…
Enables to build custom genome browsers. GIVe is a programming library allowing…
Supports the validation of experiments by annotating variants and prioritizing…