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Yiming Cheng - Computational Biologist
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Yiming Cheng

Computational Biologist
Ludwig Maximilian University of Munich • Munich • Germany

Skills and expertise

Fields of interest
  • Immune system analysis
  • WES analysis
  • RNA-seq analysis
Languages
  • Chinese
  • English
Programming languages
  • Perl
  • R

Favorites and Collections

Favorites

PolyA_SVM
Desktop
Web
ProtPhylo
Web

Collections

No collections...

TOOLS MAINTAINED

ProtPhylo

Web

ProtPhylo

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Allows prediction of protein-to-protein and phenotype-to-protein functional associations based on phylogenetic profiling. ProtPhylo achieves flexibility and state-of-the-art taxonomic and functional…

Fields of interest

Immune system analysis
Consists of an open-source deep learning model. MHCSeqNet is a program that can…
Extracts glycan determinants from a list of glycan structures. EpitopeXtractor…
Serves for determining the binding of peptides to major histocompatibility…
WES analysis
Investigates mutational signatures in cancer samples. MuSiCa includes options…
An indexing scheme to support sequence-based querying of terabyte-scale…
Identifies and validates deletion structural variation (SV) in trios with whole…
RNA-seq analysis
Allows detection of collaborative transcription factor pairs. MMARGE consists…
Offers a model to correct distance matrices and to improve the performance of…
Evaluates a phylogeny using a root-to-tip approach to define sub-lineages…