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Chien Chi - Research Tech
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Chien Chi

Research Tech
United States Department of Energy • Los Alamos National Laboratory • Los Alamos • United States of America

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • Chinese
  • English

TOOLS MAINTAINED

EDGE

Web

EDGE / Empowering the Development of Genomics Expertise

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An easy to use, highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data that can be accessed and used from anywhere in the world. EDGE…

Fields of interest

De novo sequencing analysis
Performs σ54 recognition. S54Finder was developed to work with short DNA…
Provides coverage-based search heuristics for discovering genomic regulatory…
Offers a method for detecting mutational signatures. SparseSignatures is a…
RNA-seq analysis
Deduces target gene expression profiles using a conditional generative model.…
Changes nucleotide sequences into interactive browser-based two-dimensional…
Performs secure analyses and visualization of users’ private functional…
Metagenomic sequencing analysis
Changes nucleotide sequences into interactive browser-based two-dimensional…
Performs secure analyses and visualization of users’ private functional…
Integrates both phenotypic measurements and genetic variants as features for…