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Chien Chi - Research Tech
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Chien Chi

Research Tech
United States Department of Energy • Los Alamos National Laboratory • Los Alamos • United States of America

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • Chinese
  • English

TOOLS MAINTAINED

EDGE

Web

EDGE / Empowering the Development of Genomics Expertise

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An easy to use, highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data that can be accessed and used from anywhere in the world. EDGE…

Fields of interest

De novo sequencing analysis
Maps a read against a reference region if and only if its estimated alignment…
Allows users to detect motifs within large sequence sets. PEnG-motif is an open…
Detects structural variants (SVs) and insertion and deletion genome-wide…
RNA-seq analysis
Assists in analyses of gene regulator. This package offers R modules to (i)…
Serves as a fully automatic analysis of protein family conservation within a…
Permits exome, whole-genome, and targeted sequencing analyses. Mosdepth is a…
Metagenomic sequencing analysis
Constructs and publishes websites for synteny block analyses by exploiting…
Provides a tool for the inference of viral transmissions. QUENTIN incorporates…
Uses existing tools from the Galaxy ToolShed, as well as providing additional…