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Chris M. Brown - Translational Control
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Chris M. Brown

Translational Control
University of Otago • Dunedin • New Zealand

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Perl

Favorites and Collections

Favorites

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Collections

Bioinformatics projects

TOOLS MAINTAINED

CRISPRDetect

Web
Desktop

CRISPRDetect

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A web-based and command line tool, that enables accurate identification of CRISPR arrays in genomes, their direction, repeat spacer boundaries, substitutions, insertions or deletions in repeats and…

CRISPRDirection

Desktop

CRISPRDirection

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Predicts the strand of the resulting crRNAs. The method uses as input CRISPR repeat predictions. CRISPRDirection uses parameters that are calculated from the CRISPR repeat predictions and flanking…

Fields of interest

De novo sequencing analysis
Compresses genome sequencing data. BdBG dispatches similar reads into the same…
Assists users with key gene identification in immune diseases. Gene Ranke is an…
Enables the discovery, ranking, and clustering of colinear syntenic blocks…
RNA-seq analysis
Compresses genome sequencing data. BdBG dispatches similar reads into the same…
Aims to infer causal graphs. MRPC is a machine learning algorithm that…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Metagenomic sequencing analysis
Compresses genome sequencing data. BdBG dispatches similar reads into the same…
Enables the discovery, ranking, and clustering of colinear syntenic blocks…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…