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cklopp - bio-informatic project manager
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cklopp

bio-informatic project manager
French National Institute for Agricultural Research • Paris • France

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • RNA-seq analysis
Languages
  • English
  • French
  • German
Programming languages
  • Perl
  • Python
  • R

TOOLS MAINTAINED

D-Genies

Web
Desktop

D-Genies / Dotplot large Genomes in an Interactive, Efficient and Simple way

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Allows comparison of two genomes. D-Genies uses the nucleic sequence alignment program called minimap2, and produces dot plots for nucleic sequences. The software has been developed to process large…

Fields of interest

WGS analysis
Enables linkage disequilibrium (LD) decay analysis. PopLDdecay allows…
Discovers the mean in a partition distribution. mean_partition is based on an…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
De novo sequencing analysis
Enables the discovery, ranking, and clustering of colinear syntenic blocks…
Discovers the mean in a partition distribution. mean_partition is based on an…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
RNA-seq analysis
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Assists users for annotating transcriptome and functional analysis of…
Enables exploration and classification of large collections of gene clusters.…