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crazyhottommy - cancer genomics
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crazyhottommy

cancer genomics
The University of Texas System • The University of Texas MD Anderson Cancer Center • Houston • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • WES analysis
  • BS-seq analysis
Languages
  • Chinese
  • English
Programming languages
  • Python
  • R

Fields of interest

WGS analysis
Employs gene expression heterogeneity to identify genes relating to biological…
Simulates phenotypes under different models including genetic variant effects…
Identifies somatic single nucleotide variants (SNVs). S22S detects somatic SNV…
WES analysis
Maps a read against a reference region if and only if its estimated alignment…
Browses splicing variants for genes of interest among data dealing with more…
Maps bisulfite-treated short DNA reads to a reference genome. BisPin supports…
BS-seq analysis
Identifies differentially methylated regions (DMRs). Defiant is a program that…
Serves as a fully automatic analysis of protein family conservation within a…
Allows users to map long readings with high error rates. lordFAST is designed…