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csimsek24 - PhD Student in Viral Metagenomics
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csimsek24

PhD Student in Viral Metagenomics
KU Leuven • Leuven • Belgium

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
  • Protein interaction analysis
Languages
  • English

Fields of interest

De novo sequencing analysis
Provides assistance for comparative analysis of draft genomes. Pan4Draft…
Provides a visualization engine module. genomeview was developed for both…
Makes base calls in low coverage regions. PBHoover is a consensus and…
Metagenomic sequencing analysis
Allows long read alignment to large reference genomes by splitting the index…
Automatically combines transcriptomes from difference sources, such as assembly…
Allows pathway-based analysis and visualization. PyPathway includes four…
Protein interaction analysis
Creates PyMOL hydrogen bonds (H-bonds) interaction views from Hbind tables.…
Investigates relationships between human diseases and microbial communities.…
Optimizes discrete particle swarm to resolve the global alignment of…