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davidcoffey - Physician Scientist
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Open to new opportunities

davidcoffey

Physician Scientist
Fred Hutchinson Cancer Research Center • Seattle • United States of America

Skills and expertise

Fields of interest
  • Immune system analysis
  • WES analysis
  • RNA-seq analysis
Languages
  • English
Programming languages
  • R

TOOLS MAINTAINED

LymphoSeq

Desktop

LymphoSeq

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Allows analysis of high-throughput sequencing (HST) of T and B cell receptor complementarity determining region 3 (CDR3) sequences. LymphoSeq performs multiple sequence alignment of all amino acid or…

Fields of interest

Immune system analysis
Calculates the probability of generating a given CDR3 amino acid sequence or…
Assembles and serves for visualization of known immune response to a specific…
Assists users in detecting antigenic variance. CE-BLAST is an online tool that…
WES analysis
Rectifies errors in long-read sequences. FMLRC employs the FM-index to…
Allows users to return all read mappings within a given edit distance. FEM is…
Performs genome-wide prioritizations. Scuba prioritizes from candidate genes…
RNA-seq analysis
Serves for Illumina short read sequencing data. PriLive allows users to remove…
Conducts RNA-seq read alignment and read counting from raw sequence reads to…
Detects RNA editing by learning and summarizing essential features from the…