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Danny Incarnato - RNA structure analysis
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Open to new opportunities

Danny Incarnato

RNA structure analysis
Italian Institute for Genomic Medicine • Italy

Post-doc Researcher
Epigenetics Unit @ Human Genetics Foundation

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • ChIP-seq analysis
  • scRNA-seq analysis
Languages
  • Italian
Programming languages
  • Perl

TOOLS MAINTAINED

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Spats

Desktop

Spats

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Processes reads and calculates SHAPE reactivities for SHAPE-Seq experiments on multiple RNAs. The Spats package implements a read mapping and reactivity analysis pipeline for calculating SHAPE-Seq…
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RSF

Desktop

RSF / RNA Structure Framework

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Deals with RNA structure probing and post-transcriptional modifications mapping high-throughput data. RNA Framework is a modular toolkit. Its main features are (i) automatic reference transcriptome…

Fields of interest

RNA-seq analysis
Simplifies downstream utilization of high-throughput sequencing (HTS) data.…
Discovers low-rank biclusters within a large data-matrix. This method can be…
Provides a sparse network component analysis algorithm. SparseNCA is a two…
ChIP-seq analysis
Simplifies the execution of existing short read aligners (SRA) on…
Provides an online platform for collecting, managing, analyzing, visualizing…
Aims to represent a family of aligned protein sequences or a collection of…
scRNA-seq analysis
Allows to make unsupervised projection of single cells from an scRNA-seq…
Allows users to identify minority cell types. LSPCA consists of a dimension…
Provides a stochastic gene expression model that allows for transcriptional…