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Eduardo Eyras - Group leader in Computational RNA Biology
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Eduardo Eyras

Group leader in Computational RNA Biology
Pompeu Fabra University • Barcelona • Spain

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • English
Programming languages
  • Perl
  • Python
  • R

TOOLS MAINTAINED

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Pyicount

Desktop

Pyicount

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Reads from 1 to N read files in a region file and output the counts of those files. Pyicount composes with five other modules the Pyocoteo suite.

Pyicoller

Desktop

Pyicoller

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Provides a peak caller tool. Pyicoller identifies areas in a genome with aligned reads from a ChIP-sequencing experiment. This software functions as a combination of some of Pyicos commands that…

Pyicoregion

Desktop

Pyicoregion

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Produces intragenic or intergenic windows, introns, exons, transcription start sites (TSS) and others from an annotation. Pyicoregion generates exploratory region files like arbitrary length or…

Pyicoteo

Desktop

Pyicoteo

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Provides a platform for the analysis of high-throughput sequencing data. Pyicoteo is compatible with Illumina mapped reads but can work with genomic coordinates. This software is composed of 6…

MIRA

Desktop

MIRA / Mutation Identification for RNA Alterations

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Allows users to identify and characterize somatic mutation patterns in exons and introns from coding and non-coding genes. MIRA can detect deep intronic mutations. It defines significantly mutated…
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ProfileSeq

Desktop

ProfileSeq

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Performs a quantitative comparison between profiles of genome-based signal. ProfileSeq allows for straightforward determination and correction of confounding factors. It permits to take into account…
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Pyicoenrich

Desktop

Pyicoenrich

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Applies enrichment analysis on any type of sequencing data from two conditions. User can find out how significant the difference of these two conditions are in terms of the number of reads…

Pyicos

Desktop

Pyicos

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Analyses mapped reads from diverse High-throughput sequencing (HTS) experiments: ChIP-Seq, either punctuated or broad signals, CLIP-Seq and RNA-Seq. Pyicos is a command line utility for the…
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Pyicoclip

Desktop

Pyicoclip

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An implementation of the modified false discovery rate algorithm proposed in (Yeo et al., 2009) to determine which clusters are significant in a list of genomic regions (like genes or transcripts).…
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iso-kTSP

Desktop

iso-kTSP

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A computational method, robust to biological and technical variability, which identifies significant transcript isoform changes across multiple samples. iso-kTSP reveals novel signatures of cancer in…
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SUPPA

Desktop

SUPPA

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Allows to analyze differential splicing. SUPPA measures differential splicing between conditions by exploiting the variability between biological replicates to determine the uncertainty in the…

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