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Francois Sabot - Pangenomics & Transposable Elements behaviour
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Francois Sabot

Pangenomics & Transposable Elements behaviour
Languedoc-Roussillon Universities • Institute of Research for Development • Marseille • France

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • aCGH data analysis
Languages
  • English
  • French
Programming languages
  • Perl
  • Shell (Bash)

Favorites and Collections

Favorites

BWA
Desktop

Collections

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Reviews and Discussions

LATEST REVIEWS

BWA 2017-11-06, 11:18:56
We use BWA on a daily-basis and its results are always reliable and trustable. We tested it in ALN/SAMPE legacy version and in MEM, and used those two versions depending the objectives. The options…

LATEST DISCUSSIONS

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Bioinformatics projects

TOOLS MAINTAINED

LTRclassifier

Web

LTRclassifier

(0) 0 discussion(s)
Classifies plant long terminal repeat (LTR) retrotransposons in their respective superfamily, and provides automatically a basic functional annotation of these elements. LTRclassifier was tested on…

TOGGLE

Desktop

TOGGLE / TOolbox for Generic nGs anaLysEs

(0) 0 discussion(s)
Enables users to design pipelines that manage large sets of next-generation sequencing (NGS) softwares and utilities. TOGGLE generates pipelines for largescale second- and third-generation sequencing…

Fields of interest

WGS analysis
Determines the degree of correlation between two traits from a variable of…
Leverages genetic information for imputing rice datasets. Rice Imputation…
Finds transpositions given the alignments of second generation reads to a…
De novo sequencing analysis
Scaffolds genomes using paired-end RNA-sequencing reads. P_RNA_scaffolder is a…
Allows to compress DNA sequences, quality scores and read identifiers. FaStore…
Validates scaffolding methods. Repeat aware scaffolding evaluation framework is…
aCGH data analysis
Permits user to work on segmentation of genomic and epigenomic profiles. iSeg…
Consists of a Bayesian, unsupervised, integrative clustering model for…
Finds cancer subtypes. Scluster is based on an adaptive sparse reduced-rank…