Skills and expertise
Fields of interest
- WGS analysis
- De novo sequencing analysis
- aCGH data analysis
Languages
- English
- French
Programming languages
- Perl
- Shell (Bash)
Favorites and Collections
Reviews and Discussions
LATEST REVIEWS
BWA
2017-11-06, 11:18:56
We use BWA on a daily-basis and its results are always reliable and trustable.
We tested it in ALN/SAMPE legacy version and in MEM, and used those two versions depending the objectives.
The options…
LATEST DISCUSSIONS
No discussions...
Bioinformatics projects
TOOLS MAINTAINED
LTRclassifier
Classifies plant long terminal repeat (LTR) retrotransposons in their respective superfamily, and provides automatically a basic functional annotation of these elements. LTRclassifier was tested on…
TOGGLE / TOolbox for Generic nGs anaLysEs
Enables users to design pipelines that manage large sets of next-generation sequencing (NGS) softwares and utilities. TOGGLE generates pipelines for largescale second- and third-generation sequencing…
Related profiles
Fields of interest
Determines the degree of correlation between two traits from a variable of…
Leverages genetic information for imputing rice datasets. Rice Imputation…
Finds transpositions given the alignments of second generation reads to a…
Scaffolds genomes using paired-end RNA-sequencing reads. P_RNA_scaffolder is a…
Allows to compress DNA sequences, quality scores and read identifiers. FaStore…
Validates scaffolding methods. Repeat aware scaffolding evaluation framework is…
Permits user to work on segmentation of genomic and epigenomic profiles. iSeg…
Consists of a Bayesian, unsupervised, integrative clustering model for…
Finds cancer subtypes. Scluster is based on an adaptive sparse reduced-rank…
