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Francois Sabot - Pangenomics & Transposable Elements behaviour
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Francois Sabot

Pangenomics & Transposable Elements behaviour
Languedoc-Roussillon Universities • Institute of Research for Development • Marseille • France

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • aCGH data analysis
Languages
  • English
  • French
Programming languages
  • Perl
  • Shell (Bash)

Favorites and Collections

Favorites

BWA
Desktop

Collections

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Reviews and Discussions

LATEST REVIEWS

BWA 2017-11-06, 11:18:56
We use BWA on a daily-basis and its results are always reliable and trustable. We tested it in ALN/SAMPE legacy version and in MEM, and used those two versions depending the objectives. The options…

LATEST DISCUSSIONS

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Bioinformatics projects

TOOLS MAINTAINED

LTRclassifier

Web

LTRclassifier

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Classifies plant long terminal repeat (LTR) retrotransposons in their respective superfamily, and provides automatically a basic functional annotation of these elements. LTRclassifier was tested on…

TOGGLE

Desktop

TOGGLE / TOolbox for Generic nGs anaLysEs

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Enables users to design pipelines that manage large sets of next-generation sequencing (NGS) softwares and utilities. TOGGLE generates pipelines for largescale second- and third-generation sequencing…