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fukuda-s - Bioinformatics
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University of Tokyo • Tokyo • Japan

Skills and expertise

Fields of interest
  • WES analysis
  • De novo sequencing analysis
  • Gene expression array analysis
  • English
  • Japanese
Programming languages
  • Javascript
  • Perl
  • PHP
  • R
  • Shell (Bash)

Fields of interest

WES analysis
Ranks genes by using a method considering their phenotypes to create feature…
Analyzes structural variants (SVs) and allele-specific copy numbers of genomic…
Assists users in pre-processing of read data. BLR is a library preparation…
De novo sequencing analysis
Permits visualization of pan-chromosome data. PanACEA leverages bacterial…
Classifies protein sequence and identifies remote protein homology via…
Estimates the breed ancestry of crossbred cattle using high-density single…
Gene expression array analysis
Discovers low-rank biclusters within a large data-matrix. This method can be…
Handles enrichment heatmaps. EnrichedHeatmap is an R package able to gather…
Serves for processing Infinium DNA methylation data. SeSAMe consists of light…