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Gajendra Raghava - Professor
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Gajendra Raghava

Professor
Indraprastha Institute of Information Technology (IIIT), New Delhi • Delhi • India

Presently, I am working as professor & head of Computational Biology, IIIT-Delhi. Before joining IIT Delhi, I worked as Scientist at Bioinformatics Centre, Institute of Microbial Technology (IMTECH), Chandigarh, India. More information is available…

Skills and expertise

Fields of interest
  • Immune system analysis
  • WGS analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • Perl
  • PHP
  • Python

Work experience

Professor
IIIT Delhi - Delhi, India
February 2017 - Today
Working as Head Centre for Computational Biology
Chief Scientist
Institute of Microbial Technology - Chandigarh, India
August 1986 - January 2017
Working as Chief Scientist and Head Bioinformatics Centre

TOOLS MAINTAINED

AntiTbPdb

Dataset

AntiTbPdb / Anti-TB Peptide Database

(0) 0 discussion(s)
Provides a repository of experimentally verified anti-tubercular or anti-mycobacterial peptides. AntiTbPdb contains a thousand of entries of almost 540 unique peptides. This resource covers diverge…
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RISC binder

Web

RISC binder / RNA-induced silencing complex binder

(0) 0 discussion(s)
Allows users to detect guide strands of miRNAs. RISC binder offers a computational approach to distinguish miRNA and miRNA* strands. The web application uses a support vector machine (SVM) method and…

ATPint

Web

ATPint

(0) 0 discussion(s)
Allows users to predict Adenosine-5'-triphosphate (ATP) interacting residues in a protein from its protein sequence using Support Vector Machine (SVM) based model. ATPint is a web application…

GPCRsclass

Web

GPCRsclass

(0) 0 discussion(s)
Assists users in predicting amine-binding receptors from its amino acid sequence. GPCRsclass is a web application for recognizing and classifying different types of amine receptors. The method has…

HIVfin

Web

HIVfin

(0) 0 discussion(s)
Predicts fusion inhibitors against HIV. HIVFin is an in-silico method that can be used for prediction of chemicals as potential fusion inhibitors by targeting Env-mediated entry process. Users can…

DiPCell

Web

DiPCell / Designing of inhibitors of Pancreatic Cancer cell lines

(0) 0 discussion(s)
Predicts the inhibitory activity of unknown molecules against 16 pancreatic cancer cell lines in terms of logIC50 value. DiPCell is a web application where user can design analogs and simultaneously…

EGFRpred

Web

EGFRpred

(0) 0 discussion(s)
Predicts inhibitors of mutant form of Epidermal Growth Factor Receptor (EGFR). EGFRpred provides a web server and a standalone package. Users only needs to submit a scaffold structure along with the…

CancerIn

Web
Desktop

CancerIn

(0) 0 discussion(s)
Predicts anticancer potency of an unknown molecule and its GI50 across different cancer cell lines. CancerIN is a web server that consists of three modules for designing, library screening and…

ntEGFR

Web

ntEGFR

(0) 0 discussion(s)
Predicts inhibitory activity (IC50) of molecules against wild and mutant Epidermal growth factor receptor (EGFR). ntEGFR is an open source web server that provides three options including: (i)…

TLR4HI

Web

TLR4HI

(0) 0 discussion(s)
Calculates a percent inhibitory value of the compound against TLR4. TLR4hi server predicts the inhibitory activity of chemical entity. It also helps in finding new molecule by generating analogs of…

KetoDrug

Web

KetoDrug

(0) 0 discussion(s)
Binds affinity prediction of ketoxazole derivatives. KetoDrug is a user-friendly web server for the prediction of binding affinity of small chemical molecules against Fatty Acid Amide Hydrolase…

GDoQ

Web

GDoQ

(0) 0 discussion(s)
Provides valuable information about protein-ligand interaction. GDoQ provides an open source platform to the scientific community for discovering new drugs against bacterial target…

MetaPred

Web

MetaPred

(0) 0 discussion(s)
Predicts isoform responsible for metabolizing a drug molecule. MetaPred is a web server developed to promote open source software in chemoinformatics. This web application also provides the list of…

TOXIpred

Web

TOXIpred

(0) 0 discussion(s)
Predicts toxicity of molecules. TOXIpred integrates JME molecular editor that allows users to draw molecules of their choice. It allows to predict pIGC50 of a small chemical against Tetrahymena…

KiDoQ

Web

KiDoQ

(0) 0 discussion(s)
Provides prediction of antibacterial compounds against dihydrodipicolinate synthase (DHDPS). KiDoQ is an approach for prediction of antibacterial compounds that both take quantitative…

ABMPred

Web

ABMPred

(0) 0 discussion(s)
Predicts antibacterial compounds against MurA enzyme. ABMpred is a server that allows user to predict potential inhibitors along with IC50 values using quantitative structure–activity relationship…

DrugMint

Web

DrugMint

(0) 0 discussion(s)
Predicts drug-likelihood of a compound. DrugMint is a predictive model that allows users to interactively draw/modify a molecule using a Marvin applet. It incorporates different modules to support…

DOMprint

Web

DOMprint

(0) 0 discussion(s)
Provides a domain-domain interaction (DDI) prediction server. Domprint is a web app that incorporates different modules to: (i) predict whether two domain interacts with each other or not, given a…

AHTpin

Web

AHTpin

(0) 0 discussion(s)
Designs antihypertensive (AHTs) peptides. AHTpin is a user-friendly platform providing various options to the users for predicting, designing and screening of AHT peptides. This web application…

VaxinPAD

Web

VaxinPAD

(0) 0 discussion(s)
Designs peptide-based vaccine adjuvants. VaxinPAD is a web app that incorporates different modules to: (i) predict immunomodulatory peptides or A-cell epitopes (Antigen presenting Cell epitopes),…

LPIcom

Web

LPIcom

(0) 0 discussion(s)
Permits analysis and prediction of interacting amino acids for various ligands. LPIcom provides different modules identified as ‘analysis of binding sites’, ‘comparison of multiple binding sites’ and…

IL-10pred

Web
Desktop
Mobile

IL-10pred

(0) 0 discussion(s)
Allows prediction of peptides that can induce cytokine IL-10 production. IL-10pred is a web server allowing users to (i) identify IL-10 inducing peptides in a given library of peptides, (ii) generate…

CytoPred

Web

CytoPred

(0) 0 discussion(s)
Predicts the cytokines and classifies them into families and subfamilies. CytoPred is a web server consisting in a method for predicting the cytokine based on Hybrid approach of PSI-BLAST and Support…

ProPred

Web

ProPred

(0) 0 discussion(s)
Analyses sequence data to predict MHC class II binding regions in antigenic protein sequences. Propred (generates text or graphic outputs, presents the binding score calculated from matrix in tabular…
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tRNAmod

Web

tRNAmod

(0) 0 discussion(s)
Allows users to predict and classify UMs from tRNA sequences or whole genome of any organism. tRNAmod contains two different prediction options available in tRNAmod: (1) Sequence-level prediction and…

THPdb

Dataset

THPdb / THerapeutic Peptides and Proteins

(0) 0 discussion(s)
Provides data of all US- Food and Drug Administration (FDA) approved protein and peptide therapeutics along with their corresponding drug variants available in the market. THPdb facilitates search of…

CancerPDF

Dataset

CancerPDF / Cancer Peptidome Database of bioFluids

(0) 0 discussion(s)
Offers comprehensive information on naturally occurring peptides in the biofluids of cancer patients and their expression status. CancerPDF is an online resource that integrates various web-based…

RNApin

Desktop

RNApin

(0) 0 discussion(s)
Predicts protein interacting nucleotides (PINs). RNApin is a web app providing prediction results by calculating probability score for each nucleotide of the given RNA sequence. It could be useful…
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desiRm

Web

desiRm

(0) 0 discussion(s)
Helps to make siRNA of desired efficacy without changing the target site. desiRm is a webserver for designing highly effective siRNA for silencing a gene. This tool is a method to design siRNA…

ccPDB

Dataset

ccPDB / Compilation and Creation of datasets from PDB

(0) 0 discussion(s)
Hosts data sets compiled from the literature and Protein Data Bank (PDB). ccPDB collects and compiles data sets from the literature used for developing bioinformatics methods to annotate the…
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EbolaVCR

Dataset

EbolaVCR / Ebola Virus Computational Resources

(0) 0 discussion(s)
In silico resources developed to facilitate scientific community fighting against deadly virus EBOLA. EbolaVCR enlists possible vaccine candidates, therapeutic siRNAs and other related resources.…

DNAbinder

Web

DNAbinder

(0) 0 discussion(s)
A web server for predicting DNA-binding proteins from their amino acid sequence. First, we analyzed the amino acid composition of DNA-binding proteins and based on the observation, SVM models have…
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imRNA

Web

imRNA

(0) 0 discussion(s)
A web server for designing a single-stranded RNA (ssRNA) sequence with desired immunomodulatory potentials, for designing RNA-based therapeutics, immunotherapy and vaccine adjuvants. We developed…

CancerDP

Web

CancerDP

(0) 0 discussion(s)
A webserver developed for predicting priority and potency of an anticancer drug against a cancer cell line using its genomic features, in order to throw light in the field of personalized medicine,…

dbEM

Dataset

dbEM / database of Epigenetic Modifiers

(0) 0 discussion(s)
A database of about 167 epigenetic modifiers/proteins, which are considered as potential cancer targets. In dbEM, modifiers are classified on functional basis and comprise of 48 histone methyl…

ApoCanD

Dataset

ApoCanD

(0) 0 discussion(s)
A dedicated database of 82 apoptosis proteins. ApoCanD comprises of crucial information of apoptosis proteins in the context of cancer. Genomic status of proteins in the form of mutation, copy number…

GenomeABC

Web

GenomeABC

(0) 0 discussion(s)
A web server for evaluating the performance of genome assemblers. GenomeABC can be used to evaluate the performance of assemblers on real, hypothetical and mutate genomes. (a) Whole genome is…

HemoPI

Desktop
Web
Mobile

HemoPI

(0) 0 discussion(s)
A web server for computing hemolytic potency of peptides. HemoPI facilitates the design of therapeutic peptides. It allows user to predict hemolytic, hemotoxic or red blood cell lysing potential of a…

Hmrbase

Dataset

Hmrbase

(0) 0 discussion(s)
A database for managing information about hormones and their receptors. Hmrbase is a highly curated database for which information has been collected from the literature and the public databases.…

PEPlife

Dataset

PEPlife

(0) 0 discussion(s)
Provides data related to the half-life of peptides at a single source. PEPlife is an online repository that contains over 2220 entries covering more than 1190 unique peptides. This database includes…

SATPdb

Dataset

SATPdb

(0) 0 discussion(s)
A collection of therapeutically important peptides from different peptide databases/datasets. These peptides were curated and classified based on their major function, therapeutic property and…

PEPstrMOD

Web

PEPstrMOD

(0) 0 discussion(s)
Predicts the tertiary structure of small peptides with sequence length varying between 7 to 35 residues. PEPstrMOD also handles peptides having various modifications like non-natural residues,…

PEP2D

Web

PEP2D

(0) 0 discussion(s)
Allows users to predict regular secondary structure in their peptides (e.g., H: Helix, E:Strand, C:Coil). Till date all the secondary structure prediction methods are optimized for proteins. Peptides…

TBpred

Desktop
Web

TBpred

(0) 0 discussion(s)
A prediction server that predicts four subcellular localization (cytoplasmic, integral membrane, secretory and membrane attached by lipid anchor) of mycobacterial proteins. It is SVM based method…

RSLpred

Desktop
Web

RSLpred

(0) 0 discussion(s)
To assist the plant research community, RSLpred has been developed for subcellular prediction of query rice proteins. RSLpred is a SVM based prediction method for 4 major target proteins…

ESLpred

Web

ESLpred

(0) 0 discussion(s)
A SVM based methods for predicting the subcellular localization of the eukaryotic proteins using various features of proteins. The three features i) physicochemical properties, amino acid compostion,…

PSLpred

Desktop
Web

PSLpred

(0) 0 discussion(s)
A web server for predicting subcellular localization of gram-negative bacterial proteins with an overall accuracy of 91.2%. PSLpred is a hybrid approach-based method that integrates PSI-BLAST and…

CTLPred

Desktop
Web

CTLPred

(0) 0 discussion(s)
A direct method for prediction of CTL epitopes crucial in subunit vaccine design. In direct methods the information or patterns of T cell epitopes instead of MHC binders were used for the development…

ProPred1

Desktop
Web

ProPred1

(0) 0 discussion(s)
An on-line service for identifying the MHC Class-I binding regions in antigens. It implements matrices for 47 MHC Class-I alleles, proteasomal and immunoproteasomal models. The main aim of ProPred1…

TAPPred

Web

TAPPred

(0) 0 discussion(s)
An on-line service for predicting binding affinity of peptides toward the TAP transporter. The prediction of TAP binding peptides is crucial in identifying the MHC class-1 restricted T cell epitopes.…

nHLAPred

Web

nHLAPred

(0) 0 discussion(s)
An accurate MHC binders prediction method for the large number of class I MHC alleles. nHLAPred allows to identify the promiscuous MHC class I binders (peptides that can bind to large number of…

TumorHPD

Web

TumorHPD

(0) 0 discussion(s)
Predicts and designs tumor homing peptides (THPs). TumorHPD is a web server that provides facility to predict THPs and allows to design analogues with better tumor homing abilities. The software…

CPPsite

Dataset

CPPsite

(0) 0 discussion(s)
A database of experimentally validated cell-penetrating peptides (CPPs). CPPsite 2.0 holds around 1850 peptide entries, which is nearly two times than the entries in the previous version. The updated…

CancerDR

Web

CancerDR / Cancer Drug Resistance database

(0) 0 discussion(s)
Provides information of 148 anti-cancer drugs, and their pharmacological profiling across 952 cancer cell lines. CancerDR provides comprehensive information about each drug target that includes; (i)…

MHCBN

Dataset

MHCBN

(0) 0 discussion(s)
A curated database consisting of detailed information about Major Histocompatibility Complex (MHC) Binding, Non-binding peptides and T-cell epitopes. The version 4.0 of database provides information…

Pprint

Web

Pprint / Prediction of Protein RNA-Interaction

(0) 0 discussion(s)
A web-server for predicting RNA-binding residues of a protein. The prediction is done by SVM model trained on PSSM profile generated by PSI-BLAST search of 'nr' protein database. The SVM…

HSLPred

Web

HSLPred

(0) 1 discussion(s)
VM-based method for subcellular localization of human proteins using amino acid compositions, their order and similarity search.

ChloroPred

Web

ChloroPred

(0) 0 discussion(s)
A web based tool for prediction of chloroplast proteins. ChloroPred takes an amino acid sequence as input and predicts chloroplast proteins with Support Vector Machine (SVM) and weka-SMO classifier.…

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