Gajendra Raghava's avatar image Gajendra Raghava's country flag
Indraprastha Institute of Information Technology (IIIT), New Delhi • India

Work experience

Professor

IIIT Delhi • Delhi, India

February 2017 — Present

Working as Head Centre for Computational Biology

Chief Scientist

Institute of Microbial Technology • Chandigarh, India

August 1986 — January 2017

Working as Chief Scientist and Head Bioinformatics Centre

Education

Additional info

Interests

Development of Software for Health related problems

Personnal details

Age
54
Nationality
India
Spoken languages
English and Hindi

Gajendra Raghava's favorites

Gajendra Raghava has no favorite tools for now.

Gajendra Raghava's collections

Gajendra Raghava has no tool collections for now.

Gajendra Raghava's latest reviews

Gajendra Raghava has not yet posted any review.

Gajendra Raghava's latest discussions

Gajendra Raghava has not yet opened any topic.

Tools maintained by Gajendra Raghava

IL-10pred
Web
Desktop
Mobile

IL-10pred

Allows prediction of peptides that can induce cytokine IL-10 production.…

Allows prediction of peptides that can induce cytokine IL-10 production. IL-10pred is a web server allowing users to (i) identify IL-10 inducing peptides in a given library of peptides, (ii) generate…

CytoPred
Web

CytoPred

Predicts the cytokines and classifies them into families and subfamilies.…

Predicts the cytokines and classifies them into families and subfamilies. CytoPred is a web server consisting in a method for predicting the cytokine based on Hybrid approach of PSI-BLAST and Support…

ProPred
Web

ProPred

Analyses sequence data to predict MHC class II binding regions in antigenic…

Analyses sequence data to predict MHC class II binding regions in antigenic protein sequences. Propred (generates text or graphic outputs, presents the binding score calculated from matrix in tabular…

A A A
tRNAmod
Web

tRNAmod

Allows users to predict and classify UMs from tRNA sequences or whole genome of…

Allows users to predict and classify UMs from tRNA sequences or whole genome of any organism. tRNAmod contains two different prediction options available in tRNAmod: (1) Sequence-level prediction and…

THPdb
Dataset

THPdb THerapeutic Peptides and Proteins

Provides data of all US- Food and Drug Administration (FDA) approved protein…

Provides data of all US- Food and Drug Administration (FDA) approved protein and peptide therapeutics along with their corresponding drug variants available in the market. THPdb facilitates search of…

CancerPDF
Dataset

CancerPDF Cancer Peptidome Database of bioFluids

Offers comprehensive information on naturally occurring peptides in the…

Offers comprehensive information on naturally occurring peptides in the biofluids of cancer patients and their expression status. CancerPDF is an online resource that integrates various web-based…

RNApin
Desktop

RNApin

Predicts protein interacting nucleotides (PINs). RNApin is a web app providing…

Predicts protein interacting nucleotides (PINs). RNApin is a web app providing prediction results by calculating probability score for each nucleotide of the given RNA sequence. It could be useful…

A A A
desiRm
Web

desiRm

Helps to make siRNA of desired efficacy without changing the target site.…

Helps to make siRNA of desired efficacy without changing the target site. desiRm is a webserver for designing highly effective siRNA for silencing a gene. This tool is a method to design siRNA…

ccPDB
Dataset

ccPDB Compilation and Creation of datasets from PDB

Hosts data sets compiled from the literature and Protein Data Bank (PDB). ccPDB…

Hosts data sets compiled from the literature and Protein Data Bank (PDB). ccPDB collects and compiles data sets from the literature used for developing bioinformatics methods to annotate the…

A A A
EbolaVCR
Dataset

EbolaVCR Ebola Virus Computational Resources

In silico resources developed to facilitate scientific community fighting…

In silico resources developed to facilitate scientific community fighting against deadly virus EBOLA. EbolaVCR enlists possible vaccine candidates, therapeutic siRNAs and other related resources.…

DNAbinder
Web

DNAbinder

A web server for predicting DNA-binding proteins from their amino acid…

A web server for predicting DNA-binding proteins from their amino acid sequence. First, we analyzed the amino acid composition of DNA-binding proteins and based on the observation, SVM models have…

A A A
imRNA
Web

imRNA

A web server for designing a single-stranded RNA (ssRNA) sequence with desired…

A web server for designing a single-stranded RNA (ssRNA) sequence with desired immunomodulatory potentials, for designing RNA-based therapeutics, immunotherapy and vaccine adjuvants. We developed…

CancerDP
Web

CancerDP

A webserver developed for predicting priority and potency of an anticancer drug…

A webserver developed for predicting priority and potency of an anticancer drug against a cancer cell line using its genomic features, in order to throw light in the field of personalized medicine,…

dbEM
Dataset

dbEM database of Epigenetic Modifiers

A database of about 167 epigenetic modifiers/proteins, which are considered as…

A database of about 167 epigenetic modifiers/proteins, which are considered as potential cancer targets. In dbEM, modifiers are classified on functional basis and comprise of 48 histone methyl…

ApoCanD
Dataset

ApoCanD

A dedicated database of 82 apoptosis proteins. ApoCanD comprises of crucial…

A dedicated database of 82 apoptosis proteins. ApoCanD comprises of crucial information of apoptosis proteins in the context of cancer. Genomic status of proteins in the form of mutation, copy number…

G T A T C G C T A
GenomeABC
Web

GenomeABC

A web server for evaluating the performance of genome assemblers. GenomeABC can…

A web server for evaluating the performance of genome assemblers. GenomeABC can be used to evaluate the performance of assemblers on real, hypothetical and mutate genomes. (a) Whole genome is…

HemoPI
Desktop
Web
Mobile

HemoPI

A web server for computing hemolytic potency of peptides. HemoPI facilitates…

A web server for computing hemolytic potency of peptides. HemoPI facilitates the design of therapeutic peptides. It allows user to predict hemolytic, hemotoxic or red blood cell lysing potential of a…

Hmrbase
Dataset

Hmrbase

A database for managing information about hormones and their receptors. Hmrbase…

A database for managing information about hormones and their receptors. Hmrbase is a highly curated database for which information has been collected from the literature and the public databases.…

PEPlife
Dataset

PEPlife

A manually curated database of experimentally validated therapeutic peptides…

A manually curated database of experimentally validated therapeutic peptides and their half-lives. In this database, peptides have been collected from both published articles as well as from patents.…

SATPdb
Dataset

SATPdb

A collection of therapeutically important peptides from different peptide…

A collection of therapeutically important peptides from different peptide databases/datasets. These peptides were curated and classified based on their major function, therapeutic property and…

PEPstrMOD
Web

PEPstrMOD

Predicts the tertiary structure of small peptides with sequence length varying…

Predicts the tertiary structure of small peptides with sequence length varying between 7 to 35 residues. PEPstrMOD also handles peptides having various modifications like non-natural residues,…

PEP2D
Web

PEP2D

Allows users to predict regular secondary structure in their peptides (e.g., H:…

Allows users to predict regular secondary structure in their peptides (e.g., H: Helix, E:Strand, C:Coil). Till date all the secondary structure prediction methods are optimized for proteins. Peptides…

TBpred
Desktop
Web

TBpred

A prediction server that predicts four subcellular localization (cytoplasmic,…

A prediction server that predicts four subcellular localization (cytoplasmic, integral membrane, secretory and membrane attached by lipid anchor) of mycobacterial proteins. It is SVM based method…

RSLpred
Desktop
Web

RSLpred

To assist the plant research community, RSLpred has been developed for…

To assist the plant research community, RSLpred has been developed for subcellular prediction of query rice proteins. RSLpred is a SVM based prediction method for 4 major target proteins…

ESLpred
Web

ESLpred

A SVM based methods for predicting the subcellular localization of the…

A SVM based methods for predicting the subcellular localization of the eukaryotic proteins using various features of proteins. The three features i) physicochemical properties, amino acid compostion,…

PSLpred
Desktop
Web

PSLpred

A web server for predicting subcellular localization of gram-negative bacterial…

A web server for predicting subcellular localization of gram-negative bacterial proteins with an overall accuracy of 91.2%. PSLpred is a hybrid approach-based method that integrates PSI-BLAST and…

CTLPred
Desktop
Web

CTLPred

A direct method for prediction of CTL epitopes crucial in subunit vaccine…

A direct method for prediction of CTL epitopes crucial in subunit vaccine design. In direct methods the information or patterns of T cell epitopes instead of MHC binders were used for the development…

ProPred1
Desktop
Web

ProPred1

An on-line service for identifying the MHC Class-I binding regions in antigens.…

An on-line service for identifying the MHC Class-I binding regions in antigens. It implements matrices for 47 MHC Class-I alleles, proteasomal and immunoproteasomal models. The main aim of ProPred1…

TAPPred
Web

TAPPred

An on-line service for predicting binding affinity of peptides toward the TAP…

An on-line service for predicting binding affinity of peptides toward the TAP transporter. The prediction of TAP binding peptides is crucial in identifying the MHC class-1 restricted T cell epitopes.…

nHLAPred
Web

nHLAPred

An accurate MHC binders prediction method for the large number of class I MHC…

An accurate MHC binders prediction method for the large number of class I MHC alleles. nHLAPred allows to identify the promiscuous MHC class I binders (peptides that can bind to large number of…

TumorHPD
Web

TumorHPD

Predicts and designs tumor homing peptides (THPs). TumorHPD is a web server…

Predicts and designs tumor homing peptides (THPs). TumorHPD is a web server that provides facility to predict THPs and allows to design analogues with better tumor homing abilities. The software…

CPPsite
Dataset

CPPsite

A database of experimentally validated cell-penetrating peptides (CPPs).…

A database of experimentally validated cell-penetrating peptides (CPPs). CPPsite 2.0 holds around 1850 peptide entries, which is nearly two times than the entries in the previous version. The updated…

CancerDR
Web

CancerDR Cancer Drug Resistance database

Provides information of 148 anti-cancer drugs, and their pharmacological…

Provides information of 148 anti-cancer drugs, and their pharmacological profiling across 952 cancer cell lines. CancerDR provides comprehensive information about each drug target that includes; (i)…

MHCBN
Dataset

MHCBN

A curated database consisting of detailed information about Major…

A curated database consisting of detailed information about Major Histocompatibility Complex (MHC) Binding, Non-binding peptides and T-cell epitopes. The version 4.0 of database provides information…

Pprint
Web

Pprint Prediction of Protein RNA-Interaction

A web-server for predicting RNA-binding residues of a protein. The prediction…

A web-server for predicting RNA-binding residues of a protein. The prediction is done by SVM model trained on PSSM profile generated by PSI-BLAST search of 'nr' protein database. The SVM…

HSLPred
Web

HSLPred

VM-based method for subcellular localization of human proteins using amino acid…

VM-based method for subcellular localization of human proteins using amino acid compositions, their order and similarity search.

ChloroPred
Web

ChloroPred

A web based tool for prediction of chloroplast proteins. ChloroPred takes an…

A web based tool for prediction of chloroplast proteins. ChloroPred takes an amino acid sequence as input and predicts chloroplast proteins with Support Vector Machine (SVM) and weka-SMO classifier.…

Social profiles

Twitter: @raghavagps

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.