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garantjm - Database and Web server management, Development of predictor trained by machine learning
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Open to new opportunities

garantjm

Database and Web server management, Development of predictor trained by machine learning
UniversitĂ© de Sherbrooke • Sherbrooke • Canada

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Metagenomic sequencing analysis
  • Gene expression array analysis
Languages
  • English
  • French
Programming languages
  • Python
  • R
  • Shell (Bash)

Favorites and Collections

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Collections

Reviews and Discussions

LATEST REVIEWS

ViennaRNA 2018-01-26, 16:18:53
ViennaRNA package is the most complete set of tools available to predict the secondary structure of RNA molecules. They're both easy to use in their default form and provide tons of options form…

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Bioinformatics projects

TOOLS MAINTAINED

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G4RNA screener

Desktop

G4RNA screener

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Provides a way to identify potential RNA G4. G4RNA screener includes several tools as G4NN, which is a novel machine learning approach trained on sequences. Its abstract representation of the…

Education

PhD candidate
Université de Sherbrooke
2014 - 2018
Study of irregular RNA G-quadruplexes

Fields of interest

RNA-seq analysis
Improves comparability of DNA microarray data and RNA-seq datasets. FSQN…
Allows pathway-based analysis and visualization. PyPathway includes four…
Examines epigenomic and transcriptomic next generation sequencing (NGS) data.…
Metagenomic sequencing analysis
Performs secure analyses and visualization of users’ private functional…
Enables identification of near full-length 16S rRNA gene sequences in microbial…
Consists of a codon-correct alignment and genome annotation tool. VIRULIGN…
Gene expression array analysis
Provides a collection of clustering similarity measures for all three…
Allows users to perform clustering analysis. NNC is a method based on k-means…
Enables adaptive correlation and covariance matrix shrinkage. CorShrink is a…