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haidong yan - bioinformatics
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haidong yan

bioinformatics
Virginia Tech • Blacksburg • United States of America

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • BS-seq analysis
Languages
  • English
Programming languages
  • Perl

Fields of interest

De novo sequencing analysis
Based on the Deep Learning Tutorials and Theano. DECRES is developped for the…
Minimizes the gap open and gap extension penalties depending on the length of…
Performs a structural annotation of protein-coding genes. TGFam-Finder…
RNA-seq analysis
Allows comparison and separation of orthology relationships. CAT uses the…
Designs polymerase chain reaction (PCR) primers from DNA sequence.…
Annotates and filtrates variant files. VarAFT allows the comparison of several…
BS-seq analysis
Detects candidate regions and evaluates statistical significance at the region…
An indexing scheme to support sequence-based querying of terabyte-scale…
Provides a deep neural network base caller for nanopore sequencing. Chiron…