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ibrahim zarkesh - researcher
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ibrahim zarkesh

researcher
Academic Center for Education, Culture and Research • Royan Institute • Tehran • Iran

Skills and expertise

Fields of interest
  • Synthetic biology
  • RNA-seq analysis
  • MS-based untargeted proteomics
Languages
  • English

Fields of interest

Synthetic biology
Deduces the "lab-of-origin" of DNA sequence datasets. predict-lab-origin is an…
Offers a methodology for understanding how different parameters can affect the…
Allows modular assembly of Golden Gate-compatible cloning broad-host range…
RNA-seq analysis
Assists users to observe the potential function of new genes according to those…
Assists users in evaluating methods, particularly some data-driven methods or…
Facilitates phylostratigraphic analysis. phylostratr automates sequence…
MS-based untargeted proteomics
Detects modified peptide sequence from high-quality tandem mass spectra.…
Implements algorithms for exploiting the retention time information in de novo…
Adjoins the modeling of the MS2-isolation step into a deconvolution algorithm.…