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Igor Mandric - Bioinformatician • Doctorate/PhD
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Open to new opportunities

Igor Mandric

Bioinformatician • Doctorate/PhD

University System of Georgia • Georgia State University • Atlanta, United States of America

Skills and expertise

Omics and technologies

  • WGS analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis

Programming languages

  • Python

Languages

  • English

Tools maintained

BATISCAF

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BATISCAF / BAd conTIg removal SCAFfolding

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Aims to filter out repeated and short contigs. BATISCAF is a software that consists of three steps: (1) filtering out potential repeats via ILP; (2) constructing backbone scaffolding for potentially…

Repeat aware scaffolding evaluation framework

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Repeat aware scaffolding evaluation framework

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Validates scaffolding methods. Repeat aware scaffolding evaluation framework is an approach, based on the supply of an only quantitative measure, that allows users to evaluate scaffoldings both with…
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ImReP

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ImReP

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Quantifies individual immune response based on a recombination landscape of genes encoding B and T cell receptors (BCR and TCR). ImReP is a computational method for rapid and accurate profiling of…

ScaffMatch

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ScaffMatch

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An efficient scaffolding algorithm that is able to handle reads with both short (<600 bp) and long (>35000 bp) insert sizes producing high-quality scaffolds. The ScaffMatch software…