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inbar plaschkes - bioinformatics
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inbar plaschkes

bioinformatics
Hebrew University of Jerusalem • Jerusalem • Israel

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Python

Fields of interest

De novo sequencing analysis
Rectifies errors in long-read sequences. FMLRC employs the FM-index to…
Provides a multi-assembler and multi-kmer protocol. Oyster River Protocol…
Implements several different transition kernels for updating a phylogenetic…
RNA-seq analysis
Permits users to perform co-expression analysis. CNNC is an application that…
Enables large-scale metagenome and transcriptome reads clustering. SpaRC is an…
Allows to rank, filter and explore cancer genomics data (genes, cell lines and…
Metagenomic sequencing analysis
Provides a visualization engine module. genomeview was developed for both…
Manages information related with metabolite identification. WebMetabase offers…
Secures read mapping problem on a hybrid cloud system. Secure Cloud Align…