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jdavisturak - VP of Bioinformatics
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jdavisturak

VP of Bioinformatics
OnRamp Bioinformatics • San Diego • United States of America

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • ChIP-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Python
  • R

Fields of interest

RNA-seq analysis
Serves as a dynamic alignment-free and reference-free read compression tool.…
Maps reads on a reference genome and then analyzes them. FaRLine employs a…
Authorizes users to perform low-frequency variant calling. AIRVF is a…
ChIP-seq analysis
Supplies an implementation of Regularized LS-TreeBoost & LAD-TreeBoost…
Classifies protein sequence and identifies remote protein homology via…
Filters spurious variants caused by mouse reads in patient-derived xenografts…
Metagenomic sequencing analysis
Provides an approach for integrating transcript assemblies. Mikado is a…
Performs tree reconstruction based on the supermatrix paradigm. OneTwoTree is a…
Identifies association between phenotypes and microbial taxa. BDMMA is a method…