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Jean Pierre Desvignes - Develop tool as VarAFT, UMD-Predictor, BANCCO and perform analysis of NGS data
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Jean Pierre Desvignes

Develop tool as VarAFT, UMD-Predictor, BANCCO and perform analysis of NGS data
Aix-Marseille University • Marseille • France

Skills and expertise

Fields of interest
  • WGS analysis
  • WES analysis
  • RNA-seq analysis
Languages
  • English
  • French
Programming languages
  • Java
  • Javascript
  • Perl
  • PHP
  • R
  • Shell (Bash)

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VarAFT
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VarAFT

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VarAFT / Variant Annotation and Filter Tool

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Annotates and filtrates variant files. VarAFT allows the comparison of several individuals and the collection of relevant information about the variations. It includes a coverage analysis module to…

Fields of interest

WGS analysis
Assists users with model selection in model-based clustering of mixed-data with…
Evaluates the possible tandem duplication random losses (TDRLs) for a pair of…
Simulates various mating processes. MatSim allows users to mimic both discrete…
WES analysis
Incorporates tools and workflows for the analysis of environmental DNA (eDNA)…
Identifies and validates deletion structural variation (SV) in trios with whole…
Performs somatic variant calling. DeepSomatic consists of a convolutional…
RNA-seq analysis
Assists in analyses of gene regulator. This package offers R modules to (i)…
Allows users to perform reconstruction of phylogenetic trees and ancestral…
Combines structural variation (SV) calls from different algorithms to reduce…