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jun duan - research associate
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jun duan

research associate
Vancouver Coastal Health Research Institute • University of British Columbia • Vancouver • Canada

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
  • English
Programming languages
  • Perl

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Fields of interest

WGS analysis
Permits users to cluster and visualize samples based on DNA mismatch patterns.…
Produces continuous long reads via a Pacific Biosciences sequencing simulator.…
Detects variant somatic and germline origin in cancer specimens. SGZ is a…
De novo sequencing analysis
Identifies insertions and deletions (indels) from DNA-seq or RNA-seq data.…
Identifies, classifies and annotates transposable elements (TEs) of non-model…
Implements the weight constrained and regularized convolutional filter layers.…
Metagenomic sequencing analysis
Predicts functions of no-knowledge proteins, particularly for those in the…
Allows generation and evaluation of phylogenetic trees. UBCG is based on the…
Provides a method for inferring transmission events. BadTrIP models evolution…