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karan singh - Postdoc
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karan singh

Postdoc
VA NY Harbor Healthcare System • New York University Langone Medical Center • New York City • United States of America

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • ChIP-seq analysis
  • BS-seq analysis
Languages
  • English

Fields of interest

RNA-seq analysis
A robust rank-based classifier for gene expression classification. AUCTSP works…
Assists users in pre-processing of read data. BLR is a library preparation…
Assists in analyses of gene regulator. This package offers R modules to (i)…
ChIP-seq analysis
Assists users to identify DNA methylation in distal regions with a causal…
Allows users to return all read mappings within a given edit distance. FEM is…
Evaluates RNA-seq alignment results. RNAseqEval is a package that can be used…
BS-seq analysis
Processes raw reads to count tables for RNA-seq data using Unique Molecular…
Allows to compress DNA sequences, quality scores and read identifiers. FaStore…
Filters spurious variants caused by mouse reads in patient-derived xenografts…