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karrakurt - Transcriptomics, RNA-seq, Parasitology
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Transcriptomics, RNA-seq, Parasitology
Charles University • Prague • Czech Republic

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Gene expression array analysis
  • English
Programming languages
  • Shell (Bash)

Fields of interest

De novo sequencing analysis
Applies an information theoretic approach for effective feature mining and…
Allows users to forecast footprints with a specific focus on ATAC-seq protocol.…
Categorizes organisms of interest into species by exploiting genomic…
RNA-seq analysis
Enables evaluation, filtering, and analysis of gene models, as well as…
Provides a neighbor protein structure retrieval method. ContactLib scans…
Aims at providing a functional annotation tool for the genetic variation, using…
Gene expression array analysis
Calculates average amino-acid identity (AAI) between a query proteome and all…
Aims to characterize non-model organisms. IDP-denovo allows users to handle…
Supports the validation of experiments by annotating variants and prioritizing…