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khana10 - PhD
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khana10

PhD
Tsinghua University • Beijing • China

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • ChIP-seq analysis
Languages
  • English
Programming languages
  • Javascript
  • PHP
  • Python
  • R
  • Shell (Bash)

Reviews and Discussions

LATEST REVIEWS

dbSUPER 2017-11-02, 10:09:39
A comprehensive and interactive database of super-enhancers.
JASPAR 2017-11-02, 09:46:37
A carefully and manually curated database of transcription factor (TF) binding profiles stored as position frequency matrices (PFM) and transcription factor flexible models (TFFM) for TFs from…

LATEST DISCUSSIONS

Open
dbSUPER 2017-11-02, 10:10:58
0 comments
We also have a mirror website of dbSUPER in cases main server is under maintenance…

TOOLS MAINTAINED

dbSUPER

Dataset

dbSUPER

(1) 1 discussion(s)
Provides a collection of super-enhancers. dbSUPER offers functions to send data to Galaxy instances, GREAT and Cistrome web-servers for downstream analysis. It lists genes associated with…

Fields of interest

WGS analysis
Enables linkage disequilibrium (LD) decay analysis. PopLDdecay allows…
Discovers the mean in a partition distribution. mean_partition is based on an…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
RNA-seq analysis
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Assists users for annotating transcriptome and functional analysis of…
Enables exploration and classification of large collections of gene clusters.…
ChIP-seq analysis
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Allows deduction of gene ontology (GO) attributes of proteins. MetaGO combines…
Performs σ54 recognition. S54Finder was developed to work with short DNA…