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shahid kooria


Skills and expertise

Fields of interest
  • WGS analysis
  • BS-seq analysis
  • Metagenomic sequencing analysis
  • English
Programming languages
  • C++
  • Cython
  • Java
  • Javascript
  • Perl
  • Python
  • R
  • Shell (Bash)
  • Visual Basic

Fields of interest

WGS analysis
Produces continuous long reads via a Pacific Biosciences sequencing simulator.…
Provides a simulation tool of single nucleotide polymorphism (SNP) clusters for…
Allows users to handle sequencing data with unique molecular identifiers…
BS-seq analysis
Enables genotyping and variant annotation of resequencing data produced by…
Compresses coordinate sorted aligned SAM, BAM or CRAM files. Crumble is a…
Classifies protein sequence and identifies remote protein homology via…
Metagenomic sequencing analysis
Enables large-scale metagenome and transcriptome reads clustering. SpaRC is an…
Supplies a protein homology search method alternative to BLAST. TOPAZ is a…
Provides a visualization engine module. genomeview was developed for both…