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lannes romain - PhD metagenomics minning using graph theories
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lannes romain

PhD metagenomics minning using graph theories
Pierre and Marie Curie University • Paris • France

Skills and expertise

Fields of interest
  • WGS analysis
  • Metagenomic sequencing analysis
  • Protein interaction analysis
Languages
  • English
  • French
Programming languages
  • Python
  • R
  • Rust

Fields of interest

WGS analysis
Rectifies errors in long-read sequences. FMLRC employs the FM-index to…
Performs DNA sequence classification tasks. Kameris implements a technique…
Provides a workflow management system that extends Airflow's functionality.…
Metagenomic sequencing analysis
Models gene expression data. GEESE aims to solve the problem of the…
Performs tree reconstruction based on the supermatrix paradigm. OneTwoTree is a…
Allows users to determine gene ontology (GO) annotations for incompletely…
Protein interaction analysis
Offers a toolbox dedicated to the valuation of gene regulatory networks (GRNs).…
Predicts protein cavity and allows functional analyses. CavityPlus can…
Predicts adenosine-5’-triphosphate (ATP) specific binding sites. ATPbind…