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min-jung lee

microbiome
Hallym University • Chuncheon • Republic of Korea

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Metagenomic sequencing analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • Python

Fields of interest

RNA-seq analysis
Compresses coordinate sorted aligned SAM, BAM or CRAM files. Crumble is a…
Quantifies and displays all the clusters formed by the genes, given a list of…
Identifies combined sequence and structure motifs. SMARTIV associates the RNA…
Metagenomic sequencing analysis
Filters spurious variants caused by mouse reads in patient-derived xenografts…
Performs automated joint deconvolution and phylogeny inference of tumor genomic…
Allows to compress DNA sequences, quality scores and read identifiers. FaStore…
Protein interaction analysis
Serves for identifying regulons and validating gene regulatory networks.…
Realizes link prediction for general directed or undirected complex networks,…
Merges the information encoded in the kinase with the information encoded in…