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lmshasta - bioinformatics
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lmshasta

bioinformatics
Washington State University • Pullman • United States of America

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • Python
  • R

Fields of interest

De novo sequencing analysis
Permits users to realize de novo assembling for recovering viral haplotypes…
Permits visualization of pan-chromosome data. PanACEA leverages bacterial…
Leverages adjacent normal tissue from tumor biopsies. LumosVar has seven steps:…
Metagenomic sequencing analysis
Allows users to perform de novo discovery of k-mer set memories (KSMs). KMAC is…
Evaluates RNA-seq alignment results. RNAseqEval is a package that can be used…
Performs secure analyses and visualization of users’ private functional…
Protein interaction analysis
Investigates motifs of network structure, nodes and links of any type of…
Browses large sets of protein-protein interactions (PPI) complexes. COZOID is…
Allows users to encode protein sequences as data preprocess for machine…