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mahdi SHAHHOSEINI

to annotation ngs data
Isfahan University of Medical Sciences • Isfahan • Iran

Skills and expertise

Fields of interest
  • Genome edition
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Perl

Fields of interest

Genome edition
Identifies, quantifies and visualizes genuine genome editing events form CRIPR…
Constructs optimal gRNAs for the CRISPR-Cpf1 system. CRISPR-DT can take into…
Arranges single-nucleotide and amino acid variants genome-wide and measures…
De novo sequencing analysis
Permits users to screen existing human RNA-seq datasets in order to detect the…
Identifies precise transcription factor binding sites (TFBS). DeepSNR is based…
Permits users to classify contigs. SCOP is a scaffolding method that optimizes…
Metagenomic sequencing analysis
Performs DNA sequence classification tasks. Kameris implements a technique…
Allows users to build a pan-genome data structure. seq-seq-pan is a software…
Allows metagenomic binning and avoids read alignment without loss of accuracy.…