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Mark D. Preston - NGS/BI
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Mark D. Preston

NGS/BI
National Institute for Biological Standards and Control • Potters Bar • United Kingdom

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • MS-based untargeted metabolomics
Languages
  • English

TOOLS MAINTAINED

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PlasmoView

Web

PlasmoView

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Facilitates the investigation of Plasmodium falciparum (Pf) polymorphisms across populations in malaria endemic regions and the presentation of allele frequencies on maps. The first release contains…

Fields of interest

De novo sequencing analysis
Enables evaluation, filtering, and analysis of gene models, as well as…
Allows long read alignment to large reference genomes by splitting the index…
Performs tree reconstruction based on the supermatrix paradigm. OneTwoTree is a…
RNA-seq analysis
Makes base calls in low coverage regions. PBHoover is a consensus and…
Integrates existing data on proteins in budding yeast. GEMMER is a web-based…
Provides a sparse network component analysis algorithm. SparseNCA is a two…
MS-based untargeted metabolomics
Offers an assortment of features for metabolomics data processing. SECIMTools…
Permits intuitive quantitative analyses and comparative visualisation of…
Automates the discovery of chemical organizations, and conducts a quantitative…