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matin biabanaki - ms of genetics
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matin biabanaki

ms of genetics
Tarbiat Modares University • Tehran • Iran

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Gene expression array analysis
  • English
Programming languages
  • R

Fields of interest

De novo sequencing analysis
Implements an indexing data structure for compacted de Bruijn graph (dBG) and…
Encodes string sequence into a mathematical representation. Nucl2Vec aims to…
Estimates the ancestries and leverages them for their association with…
RNA-seq analysis
Identifies combined sequence and structure motifs. SMARTIV associates the RNA…
Automatically combines transcriptomes from difference sources, such as assembly…
An indexing scheme to support sequence-based querying of terabyte-scale…
Gene expression array analysis
Cluster-select the optimal number of clusters and removes outlier objects.…
Supplies a protein homology search method alternative to BLAST. TOPAZ is a…
Performs analyzes of high-throughput data from complex, heterogeneous tissues.…