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Marco - Microbial ecology, WGS, 16S, shotgun metagenomics
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Open to new opportunities

Marco

Microbial ecology, WGS, 16S, shotgun metagenomics
Agroscope • Bern • Switzerland

Skills and expertise

Fields of interest
  • WGS analysis
  • Metagenomic sequencing analysis
  • aCGH data analysis
Languages
  • English
  • French
  • German
  • Italian
  • Spanish
Programming languages
  • Python
  • R
  • Shell (Bash)

Reviews and Discussions

LATEST REVIEWS

Slicembler 2018-05-02, 17:34:01
poor manual and user unfriendly

LATEST DISCUSSIONS

No discussions...


Work experience

PostDoc
Agroscope - Bern-Liebefeld
June 2016 - Today
16S rRNA gene metagenomic studies in cheese and dairy products Bioinformatics (R, Python, Bash) Biostatistics (R) Microbial ecology

Education

PhD
ETH Z├╝rich
2011 - 2015
My PhD project aimed at understanding primary colonization and ecological stability of microbial communities in two unvegetated alpine glacier forefields of different geology (siliceous vs. calcareous) in Switzerland. The goal is to determine the keyfactor shaping the microbial community structure in those forefields.

Fields of interest

WGS analysis
Filters out single nucleotide polymorphism (SNP) events caused by recombination…
Provides a platform to build reproducible and flexible pipelines for scalable…
Evaluates the possible tandem duplication random losses (TDRLs) for a pair of…
Metagenomic sequencing analysis
Maps reads against multiple reference genomes. PanVC is designed for variant…
Filters spurious variants caused by mouse reads in patient-derived xenografts…
Allows users to test the mediation effect of the human microbiome. MedTest is a…
aCGH data analysis
Permits user to work on segmentation of genomic and epigenomic profiles. iSeg…
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…
Finds cancer subtypes. Scluster is based on an adaptive sparse reduced-rank…