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Michael G. Sovic - Biomedical Informatics Specialist
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Michael G. Sovic

Biomedical Informatics Specialist
University System of Ohio • The Ohio State University • Columbus • United States of America

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • BS-seq analysis
Languages
  • English
Programming languages
  • Perl
  • R
  • Shell (Bash)

TOOLS MAINTAINED

AftrRAD

Desktop

AftrRAD

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Assembles and genotypes RADseq data, and outputs these data in various formats for downstream analyses. AftrRAD is able to accurately assemble loci, while accounting for indel variation among…

Fields of interest

De novo sequencing analysis
Allows generation and evaluation of phylogenetic trees. UBCG is based on the…
Allows to compress DNA sequences, quality scores and read identifiers. FaStore…
Includes implementations of the autopolyploid (diseq), allopolyploid (alloSNP),…
RNA-seq analysis
Enables the application of gene set tests (GST) in the absence of large parts…
Identifies potential long non-coding RNAs (lncRNA)-disease associations. TPGLDA…
Serves as a fully automatic analysis of protein family conservation within a…
BS-seq analysis
Aims to represent a family of aligned protein sequences or a collection of…
Makes base calls in low coverage regions. PBHoover is a consensus and…
Assists users in optimized block trimming. This algorithm is a polynomial-time…