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Michal Linial - Prof
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Michal Linial

Prof
Hebrew University of Jerusalem • Jerusalem • Israel

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • ChIP-seq analysis
  • Gene expression microarray analysis
Languages
  • English
Programming languages
  • Python

TOOLS MAINTAINED

FABRIC

Desktop

FABRIC / Functional Alteration Bias Recovery In Coding-regions

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Identifies genes with alteration bias. FABRIC is an open source application that is able to highlight genes with alteration bias in various contexts. The software attributes effect scores to…

ClanTox

Web

ClanTox / Classifier of Animal Toxins

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Serves for the extraction of sequence-driven features from the primary protein sequence followed by the application of a classification system trained on known animal toxins. ClanTox is a systematic…

CleavePred

Web

CleavePred

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A web tool for predicting the cleavage sites of proproteins such as prohormones and neuropeptides. CleavePred's algorithm is powered by ASAP, a Machine-Learning framework for predicting local…

ProFET

Desktop

ProFET / Protein Feature Engineering Toolkit

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Allows easy, universal discovery of new target proteins, as well as understanding the features underlying different high-level protein functions. ProFET extracts hundreds of features covering the…

ProtoBug

Dataset

ProtoBug

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A database and resource of protein families in Arthropod genomes. ProtoBug platform presents the relatedness of complete proteomes from 17 insects as well as a proteome of the crustacean, Daphnia…

ProtoNet

Dataset

ProtoNet

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Consists in a data structure of protein families. ProtoNet aims to achieve an automatic hierarchical clustering of the protein sequences space. The database generates automatically, with no…

Fields of interest

RNA-seq analysis
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Assists users for annotating transcriptome and functional analysis of…
Enables exploration and classification of large collections of gene clusters.…
ChIP-seq analysis
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Allows deduction of gene ontology (GO) attributes of proteins. MetaGO combines…
Performs σ54 recognition. S54Finder was developed to work with short DNA…
Gene expression microarray analysis
Assists users for annotating transcriptome and functional analysis of…
Enables exploration and classification of large collections of gene clusters.…
Changes nucleotide sequences into interactive browser-based two-dimensional…