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Michał Burdukiewicz - n-gram analysis of biological sequences in R
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Open to new opportunities

Michał Burdukiewicz

n-gram analysis of biological sequences in R
University of Wrocław • Wrocław • Poland

Skills and expertise

Fields of interest
  • WGS analysis
  • Gene expression array analysis
  • NMR-based proteomics analysis
Languages
  • English
Programming languages
  • R

TOOLS MAINTAINED

AmyloGram

Web
Desktop

AmyloGram

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Predicts amyloidogenic sequences in eukaryotic proteins using random forests and n-gram analysis. AmyloGram was developed for the detection of amyloid peptides or amyloidogenic regions using an…

Fields of interest

WGS analysis
Identifies convergent changes. PCOC is based on the following definition: a…
Maps a read against a reference region if and only if its estimated alignment…
Allows users to identify tumor clones and tumor samples based on factorial…
Gene expression array analysis
Allows users to perform clustering analysis. NNC is a method based on k-means…
Permits the construction of tumor-cell specific gene/protein co-expression…
Serves as a fully automatic analysis of protein family conservation within a…
NMR-based proteomics analysis
Automates the elimination of noise peaks. Filt Robot employs convolutional…
Assists users to perform spectra analysis. Dumpling comprises the following…
Performs general ensemble-based validation step and a simple and…