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nick_youngblut - Researcher • Doctorate/PhD
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nick_youngblut

Researcher • Doctorate/PhD

Max Planck Society • Munich, Germany

http://www.leylab.com/people/

http://www.eb.tuebingen.mpg.de/nc/research/departments/microbiome-science/staff-microbiome-science.html

Skills and expertise

Omics and technologies

  • WGS analysis
  • Metagenomic sequencing analysis
  • aCGH data analysis

Programming languages

  • Python
  • R

Languages

  • English

Reviews and Discussions

LATEST REVIEWS

PhyloPhlAn 2017-11-01, 09:32:49
It is not available via conda. It requires usearch (and vsearch cannot just be substituted). Also, it requires running the phylophlan.py within the same directory *and* all of your files MUST be in…
ITEP 2016-12-05, 08:27:08
ITEP has pretty good documentation and support. Setup is pretty straight-forward, but it's not integrated into conda or other package managers. ITEP is great for creating a database that can be…

LATEST DISCUSSIONS

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Tools maintained

HTSSIP

Desktop

HTSSIP

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Consists of a standardized analysis software. HTSSIP simplifies reproducible analyses on high throughput sequencing with stable isotope probing (HTS-SIP) datasets and direct cross-study comparisons.…

SIPSim

Desktop

SIPSim

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Models stable isotope probing of nucleic acids (DNA-SIP) data and assesses how changes in key SIP experimental parameters are predicted to affect DNA-SIP accuracy. SIPSim can feign the distribution…