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Nirupama Benis - Postdoc
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Nirupama Benis

Postdoc
Wageningen University & Research • Wageningen • Netherlands

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Gene expression array analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • R

Fields of interest

RNA-seq analysis
Integrates predictions of several popular scores (SIFT, Polyphen-2, LRT,…
Uses existing tools from the Galaxy ToolShed, as well as providing additional…
Provides a quick navigation into any set of scores associated to the…
Gene expression array analysis
Contains a library to process over- and under-representation of certain gene…
Provides a neighbor protein structure retrieval method. ContactLib scans…
Gathers investigations of phytohormone responses. GSHR employs the integration…
Protein interaction analysis
Performs penalized co-inertia analysis (CIA). pCIA is an R package that…
Assists users with virtual screening. BindScope is a web GPU-accelerated…
Identifies altered subnetworks. Hierarchical HotNet is a method that jointly…